Mind the gap-analysis! – How complete are DNA barcode reference libraries for monitoring-relevant aquatic species in Europe?

نویسندگان

چکیده

Molecular species identification with DNA metabarcoding can potentially accelerate, streamline and standardise biomonitoring routines. Currently, it is tested how this new technique be implemented for the European Water Framework Directive (WFD) Marine Strategy (MSFD). To connect results from current monitoring routines, an extensive, high-quality barcode reference database required. Hence, a gap-analysis of Barcode Life Data Systems (BOLD) was performed as part EU-COST Action DNAqua-Net (Weigand et al. 2019), which updated in 2021. It aimed to analyse completeness BOLD on national WFD lists marine ERMS (European Register Species) AMBI (AZTI Biotic Index) lists. The data were supplemented by MitoFish freshwater fish Diat.barcode diatoms. Several thousands included gap-analysis, although not all countries currently apply species-level biological quality elements. coverage different taxonomic groups varied strongly, high levels (> 80%) vascular plants, low diatoms plathelminths (< 15%). As general pattern, monitored several had higher compared those only single country. focused additionally availability metadata (e.g., geographical origin specimen or determiner name) barcodes. we analysed if stored public (with access metadata) private (without mined GenBank (metadata are available but easy access). Although many (43% macroinvertebrates 21% species), proportion without neglectable (22% 22% species). Another issue that emerged deposited barcodes identified reverse taxonomy (RT), i.e., specimens molecularly via its itself associated name. This problematic originally misidentified samples lead false RT-identifications, making appear more trustworthy than actually is. For macroinvertebrates, 39% 65% originated RT, impacting 11% species. information about RT publicly data, real impact might even higher.

برای دانلود باید عضویت طلایی داشته باشید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Complete DNA barcode reference library for a country's butterfly fauna reveals high performance for temperate Europe.

DNA barcoding aims to accelerate species identification and discovery, but performance tests have shown marked differences in identification success. As a consequence, there remains a great need for comprehensive studies which objectively test the method in groups with a solid taxonomic framework. This study focuses on the 180 species of butterflies in Romania, accounting for about one third of...

متن کامل

Improved protocols to accelerate the assembly of DNA barcode reference libraries for freshwater zooplankton

Currently, freshwater zooplankton sampling and identification methodologies have remained virtually unchanged since they were first established in the beginning of the XX century. One major contributing factor to this slow progress is the limited success of modern genetic methodologies, such as DNA barcoding, in several of the main groups. This study demonstrates improved protocols which enable...

متن کامل

BOKP: A DNA Barcode Reference Library for Monitoring Herbal Drugs in the Korean Pharmacopeia

Herbal drug authentication is an important task in traditional medicine; however, it is challenged by the limitations of traditional authentication methods and the lack of trained experts. DNA barcoding is conspicuous in almost all areas of the biological sciences and has already been added to the British pharmacopeia and Chinese pharmacopeia for routine herbal drug authentication. However, DNA...

متن کامل

Abstract Local Reasoning for Concurrent Libraries: Mind the Gap

Local Reasoning for Concurrent Libraries: Mind the Gap Philippa Gardner, Azalea Raad, Mark Wheelhouse, Adam Wright1 Department of Computing, Imperial College London, UK

متن کامل

Potential for DNA-based identification of Great Lakes fauna: match and mismatch between taxa inventories and DNA barcode libraries

DNA-based identification of mixed-organism samples offers the potential to greatly reduce the need for resource-intensive morphological identification, which would be of value both to bioassessment and non-native species monitoring. The ability to assign species identities to DNA sequences found depends on the availability of comprehensive DNA reference libraries. Here, we compile inventories f...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

ژورنال

عنوان ژورنال: ARPHA Conference Abstracts

سال: 2021

ISSN: ['2603-3925']

DOI: https://doi.org/10.3897/aca.4.e65473